Variant report

Variant	rs7087818
Chromosome Location	chr10:23302289-23302290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23301107..23302880-chr10:23315707..23318536,2	K562	blood:
2	chr10:23301145..23302883-chr10:23341346..23344238,2	K562	blood:
3	chr10:23293236..23296028-chr10:23300295..23302745,2	MCF-7	breast:
4	chr10:23297640..23302791-chr10:23338306..23344811,10	K562	blood:

Variant related genes	Relation type
ENSG00000165309	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508656	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10764366	0.82[CHB][hapmap]
rs10764367	0.82[CHB][hapmap]
rs10828377	0.82[CHB][hapmap]
rs10828378	0.82[CHB][hapmap]
rs10828379	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10828380	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10828381	0.82[CHB][hapmap]
rs10828382	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10828389	1.00[JPT][hapmap]
rs10828390	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs10828392	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10828395	0.94[CEU][hapmap]
rs11013210	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs11013225	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11013234	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11511183	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12252340	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12355471	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17440393	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs1987026	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2100968	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs34262913	0.86[ASN][1000 genomes]
rs6482246	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077613	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7084413	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7087200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099925	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100499	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907625	0.82[CHB][hapmap]
rs7911289	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9665603	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975810	chr10:23302287-23306366	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23300000-23303800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23300400-23303400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:23301000-23303000	Weak transcription	Brain Substantia Nigra	brain
4	chr10:23301400-23311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:23302200-23303400	Enhancers	Brain Hippocampus Middle	brain

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