Variant report

Variant	rs11013210
Chromosome Location	chr10:23249109-23249110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10508656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10764366	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs10764367	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]
rs10828377	1.00[CHB][hapmap]
rs10828378	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10828379	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap]
rs10828380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828381	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10828382	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10828389	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828390	0.86[ASN][1000 genomes]
rs10828392	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828395	1.00[CHB][hapmap]
rs11013206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013225	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[MKK][hapmap];0.86[ASN][1000 genomes]
rs11013234	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11511183	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12252340	1.00[CHB][hapmap]
rs12355471	1.00[CHB][hapmap]
rs12359749	0.89[ASN][1000 genomes]
rs17440393	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs1987026	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2100968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs35373354	0.88[ASN][1000 genomes]
rs55706023	0.98[ASN][1000 genomes]
rs55727318	0.89[ASN][1000 genomes]
rs6482246	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7077613	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7083053	0.89[ASN][1000 genomes]
rs7083069	0.89[ASN][1000 genomes]
rs7084413	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7087200	1.00[CHB][hapmap]
rs7087818	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7099925	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7100499	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7895048	0.88[ASN][1000 genomes]
rs7907625	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7911289	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs9665603	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11013210	PTF1A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23247600-23249400	Enhancers	HepG2	liver
2	chr10:23249000-23249200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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