Variant report

Variant	rs10828368
Chromosome Location	chr10:23187710-23187711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10734042	0.85[EUR][1000 genomes]
rs10741009	0.82[EUR][1000 genomes]
rs10741010	0.84[EUR][1000 genomes]
rs10741012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764347	0.99[EUR][1000 genomes]
rs10764351	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10764353	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10764354	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10764361	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764362	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828350	0.89[EUR][1000 genomes]
rs10828359	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10828362	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828364	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10828367	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013151	0.82[EUR][1000 genomes]
rs11013168	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1171136	0.86[JPT][hapmap]
rs1171138	0.86[JPT][hapmap]
rs12241713	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12262044	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12355848	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12360508	0.86[JPT][hapmap]
rs1578343	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16922812	0.86[JPT][hapmap]
rs2105270	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2448132	0.86[JPT][hapmap]
rs2886153	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101796	0.86[JPT][hapmap]
rs3109068	0.86[JPT][hapmap]
rs4748829	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7067598	0.86[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs7088061	0.86[JPT][hapmap]
rs7899129	0.85[EUR][1000 genomes]
rs7899968	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9732427	0.86[JPT][hapmap]
rs9988672	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23184400-23188400	Weak transcription	HMEC	breast
2	chr10:23184600-23188400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:23186200-23190400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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