Variant report

Variant	rs16922812
Chromosome Location	chr10:23222070-23222071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828376	0.94[ASN][1000 genomes]
rs1171136	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1171137	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1171138	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1171139	0.83[ASN][1000 genomes]
rs12359300	0.94[ASN][1000 genomes]
rs12360508	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2448132	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3101796	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3109068	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7067598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7088061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7093957	0.90[ASN][1000 genomes]
rs7098947	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs73600570	0.83[EUR][1000 genomes]
rs9732427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23220400-23222200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:23221200-23222200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:23221200-23222600	Enhancers	Adipose Nuclei	Adipose
4	chr10:23221400-23222200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:23221400-23222200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:23222000-23222200	Active TSS	Osteobl	bone
7	chr10:23222000-23222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:23222000-23223400	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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