Variant report

Variant	rs1171139
Chromosome Location	chr10:23222630-23222631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10828376	0.81[AMR][1000 genomes]
rs1171137	0.86[ASN][1000 genomes]
rs1171138	0.89[ASN][1000 genomes]
rs12359300	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12360508	0.80[ASN][1000 genomes]
rs16922812	0.83[ASN][1000 genomes]
rs7067598	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7088061	0.81[AMR][1000 genomes]
rs9732427	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23222000-23223400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23222200-23222800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:23222600-23223600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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