Variant report

Variant	rs7067598
Chromosome Location	chr10:23217699-23217700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10828368	0.81[AFR][1000 genomes]
rs10828376	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1171136	0.89[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs1171137	0.87[ASN][1000 genomes]
rs1171138	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1171139	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12359300	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360508	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16922812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2448132	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3101796	0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs3109068	0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7088061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7093957	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9732427	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7067598	GPR158	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23216200-23218800	Active TSS	Brain Anterior Caudate	brain
2	chr10:23216400-23218000	Active TSS	Fetal Lung	lung
3	chr10:23217200-23220400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:23217200-23221000	Weak transcription	HSMM	muscle
5	chr10:23217400-23220400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:23217400-23220400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23217400-23220400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:23217400-23220400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:23217400-23220400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:23217400-23220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:23217400-23220600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:23217400-23220600	Weak transcription	Fetal Heart	heart
13	chr10:23217400-23220600	Weak transcription	NH-A	brain
14	chr10:23217400-23220800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:23217400-23220800	Weak transcription	GM12878-XiMat	blood
16	chr10:23217400-23221000	Weak transcription	Brain Substantia Nigra	brain
17	chr10:23217600-23220600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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