Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23124982..23127882-chr10:23130656..23134139,4	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10437409	0.80[EUR][1000 genomes]
rs10734042	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741009	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10741010	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741012	0.84[EUR][1000 genomes]
rs10764346	0.96[ASN][1000 genomes]
rs10764347	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764351	0.82[EUR][1000 genomes]
rs10764353	0.83[EUR][1000 genomes]
rs10764354	0.83[EUR][1000 genomes]
rs10764361	0.84[EUR][1000 genomes]
rs10764362	0.83[EUR][1000 genomes]
rs10828345	0.91[ASN][1000 genomes]
rs10828346	0.93[ASN][1000 genomes]
rs10828348	0.96[ASN][1000 genomes]
rs10828359	0.83[EUR][1000 genomes]
rs10828362	0.83[EUR][1000 genomes]
rs10828368	0.83[EUR][1000 genomes]
rs11013151	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013168	0.83[EUR][1000 genomes]
rs12241713	0.83[EUR][1000 genomes]
rs12262044	0.83[EUR][1000 genomes]
rs12355848	0.83[EUR][1000 genomes]
rs1578343	0.83[EUR][1000 genomes]
rs2105270	0.83[EUR][1000 genomes]
rs2886153	0.84[EUR][1000 genomes]
rs4534468	0.80[AMR][1000 genomes]
rs4748829	0.83[EUR][1000 genomes]
rs7899129	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7899968	0.83[EUR][1000 genomes]
rs7903292	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
2	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23129000-23133800	Weak transcription	Aorta	Aorta
5	chr10:23131400-23137000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:23131600-23133200	Weak transcription	Brain Substantia Nigra	brain
7	chr10:23131800-23133400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: