Variant report

Variant	rs10828348
Chromosome Location	chr10:23132719-23132720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10734042	0.91[ASN][1000 genomes]
rs10741009	0.90[ASN][1000 genomes]
rs10741010	0.96[ASN][1000 genomes]
rs10764346	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764347	0.92[ASN][1000 genomes]
rs10828345	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828346	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013151	0.85[ASN][1000 genomes]
rs11013152	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11814688	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1417374	0.84[EUR][1000 genomes]
rs35687987	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs67531879	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7475039	0.81[ASN][1000 genomes]
rs7899129	0.95[ASN][1000 genomes]
rs7903292	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9988672	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
2	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23129000-23133800	Weak transcription	Aorta	Aorta
5	chr10:23131400-23137000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:23131600-23133200	Weak transcription	Brain Substantia Nigra	brain
7	chr10:23131800-23133400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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