Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10437409	0.99[ASN][1000 genomes]
rs10828342	0.86[AMR][1000 genomes]
rs10828343	0.86[AMR][1000 genomes]
rs10828348	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10828349	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10828350	0.98[ASN][1000 genomes]
rs10828351	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10828360	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10828361	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11013139	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs11013165	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11013167	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11013170	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11013171	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11013172	0.86[AMR][1000 genomes]
rs11013173	0.83[AMR][1000 genomes]
rs11013182	0.89[AMR][1000 genomes]
rs11492538	0.86[AMR][1000 genomes]
rs12218597	0.87[AMR][1000 genomes]
rs1320605	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1417374	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1417376	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1922125	0.82[AMR][1000 genomes]
rs4747447	0.86[AMR][1000 genomes]
rs4748822	0.92[CHB][hapmap]
rs56284174	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7098947	0.83[JPT][hapmap]
rs73600554	0.86[AMR][1000 genomes]
rs73600555	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73600559	0.83[AMR][1000 genomes]
rs73600563	0.89[AMR][1000 genomes]
rs9732527	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11013152	MSRB2	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23134200-23137800	Weak transcription	Aorta	Aorta
2	chr10:23135600-23138200	Enhancers	Brain Hippocampus Middle	brain
3	chr10:23136000-23137800	Enhancers	Brain Substantia Nigra	brain
4	chr10:23136200-23140400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23137000-23138000	Enhancers	Brain Angular Gyrus	brain
6	chr10:23137000-23140400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:23137000-23140600	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:23137200-23138000	Enhancers	Brain Anterior Caudate	brain
9	chr10:23137600-23137800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:23137600-23138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:23137600-23138200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:23137600-23138200	Enhancers	Gastric	stomach
13	chr10:23137600-23138200	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:23137600-23138400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:23137600-23138400	Enhancers	Spleen	Spleen
16	chr10:23137600-23138600	Enhancers	Pancreas	Pancrea
17	chr10:23137600-23138600	Enhancers	Right Ventricle	heart
18	chr10:23137600-23139800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:23137600-23139800	Enhancers	Left Ventricle	heart
20	chr10:23137600-23139800	Enhancers	Right Atrium	heart
21	chr10:23137600-23140800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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