Variant report

Variant	rs10828349
Chromosome Location	chr10:23137039-23137040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10437409	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734042	0.80[EUR][1000 genomes]
rs10828350	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10828351	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11013139	0.92[CHB][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap]
rs11013152	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11013165	0.81[ASN][1000 genomes]
rs11013167	0.81[ASN][1000 genomes]
rs1320605	0.81[ASN][1000 genomes]
rs1417374	0.89[ASN][1000 genomes]
rs4748822	0.92[CHB][hapmap]
rs56284174	0.82[ASN][1000 genomes]
rs7098947	0.83[JPT][hapmap]
rs7899129	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:23134000-23137600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:23134200-23137200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:23134200-23137800	Weak transcription	Aorta	Aorta
5	chr10:23135600-23138200	Enhancers	Brain Hippocampus Middle	brain
6	chr10:23136000-23137800	Enhancers	Brain Substantia Nigra	brain
7	chr10:23136200-23140400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:23137000-23138000	Enhancers	Brain Angular Gyrus	brain
9	chr10:23137000-23140400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:23137000-23140600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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