Variant report

Variant	rs11013167
Chromosome Location	chr10:23163178-23163179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23161173..23163243-chr10:23343322..23345997,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10437409	0.81[ASN][1000 genomes]
rs10828349	0.81[ASN][1000 genomes]
rs10828351	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10828360	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828361	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828374	0.83[ASN][1000 genomes]
rs11013152	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11013165	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013170	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013171	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013172	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11013173	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013182	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12218597	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1320605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417376	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1922125	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56284174	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73600554	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73600555	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73600559	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73600563	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9787658	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23160800-23165000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23161400-23165400	Enhancers	Brain Substantia Nigra	brain
3	chr10:23161600-23165000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:23161800-23163800	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:23162200-23163200	Enhancers	Brain Angular Gyrus	brain
6	chr10:23162200-23163200	Enhancers	Brain Anterior Caudate	brain
7	chr10:23162200-23163600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:23162200-23164800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:23162400-23167400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:23162600-23164600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:23162600-23164800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr10:23162600-23165400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:23162800-23163200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:23162800-23163400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:23162800-23163600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:23162800-23164400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:23162800-23166000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:23162800-23166400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:23163000-23163400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:23163000-23163400	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr10:23163000-23163400	Enhancers	Fetal Muscle Leg	muscle
22	chr10:23163000-23163800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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