Variant report

Variant	rs10828374
Chromosome Location	chr10:23203082-23203083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10764366	0.80[CEU][hapmap]
rs10764367	0.80[CEU][hapmap]
rs11013165	0.83[ASN][1000 genomes]
rs11013167	0.83[ASN][1000 genomes]
rs11013182	0.90[ASN][1000 genomes]
rs12218597	0.89[ASN][1000 genomes]
rs1320605	0.83[ASN][1000 genomes]
rs1417376	0.85[ASN][1000 genomes]
rs1922125	0.84[ASN][1000 genomes]
rs56284174	0.84[ASN][1000 genomes]
rs7098947	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs73600554	0.81[ASN][1000 genomes]
rs73600559	0.84[ASN][1000 genomes]
rs73600563	0.90[ASN][1000 genomes]
rs73600570	0.82[AFR][1000 genomes]
rs9665603	0.80[CEU][hapmap]
rs9787658	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10828374	SPAG6	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23201000-23204000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:23201600-23203400	Weak transcription	Ovary	ovary
3	chr10:23202200-23204000	Weak transcription	Fetal Kidney	kidney
4	chr10:23203000-23203400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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