Variant report

Variant	rs10828351
Chromosome Location	chr10:23140731-23140732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10437409	0.99[ASN][1000 genomes]
rs10828342	0.85[AMR][1000 genomes]
rs10828343	0.85[AMR][1000 genomes]
rs10828349	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10828350	0.98[ASN][1000 genomes]
rs10828360	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10828361	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11013139	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs11013152	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013165	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013167	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013170	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11013171	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11013172	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013173	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11013182	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11492538	0.85[AMR][1000 genomes]
rs12218597	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1320605	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1417374	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1417376	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17440393	0.85[CEU][hapmap]
rs1922125	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4747447	0.85[AMR][1000 genomes]
rs4748822	0.92[CHB][hapmap]
rs56284174	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7098947	0.83[JPT][hapmap]
rs7098978	0.80[EUR][1000 genomes]
rs73600554	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73600555	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73600559	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73600563	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9732527	0.85[AMR][1000 genomes]
rs9787658	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10828351	MSRB2	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23137600-23140800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:23138200-23142000	Weak transcription	Gastric	stomach
3	chr10:23138400-23141800	Weak transcription	Spleen	Spleen
4	chr10:23138600-23141000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:23138600-23141800	Weak transcription	Ovary	ovary
6	chr10:23138600-23144200	Weak transcription	Right Ventricle	heart
7	chr10:23138800-23140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:23138800-23142400	Weak transcription	HSMMtube	muscle
9	chr10:23138800-23143000	Weak transcription	Osteobl	bone
10	chr10:23139000-23141200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:23139000-23142000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:23139000-23142200	Enhancers	Brain Hippocampus Middle	brain
13	chr10:23139000-23142600	Enhancers	Brain Anterior Caudate	brain
14	chr10:23139000-23143600	Weak transcription	Fetal Heart	heart
15	chr10:23139000-23144200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:23139200-23141800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:23139800-23142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:23139800-23142000	Weak transcription	Right Atrium	heart
19	chr10:23139800-23143000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:23139800-23144200	Weak transcription	Left Ventricle	heart
21	chr10:23140000-23143800	Weak transcription	Aorta	Aorta
22	chr10:23140200-23142000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:23140400-23141000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr10:23140400-23142400	Enhancers	HepG2	liver
25	chr10:23140400-23144400	Enhancers	HSMM	muscle
26	chr10:23140600-23140800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:23140600-23141000	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr10:23140600-23141000	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr10:23140600-23141200	Flanking Active TSS	Brain Substantia Nigra	brain
30	chr10:23140600-23141400	Enhancers	K562	blood

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