Variant report

Variant	rs7098978
Chromosome Location	chr10:23144216-23144217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10764346	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10764347	0.81[AMR][1000 genomes]
rs10764355	0.97[EUR][1000 genomes]
rs10764356	0.97[EUR][1000 genomes]
rs10764357	0.96[EUR][1000 genomes]
rs10764358	0.98[EUR][1000 genomes]
rs10828346	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10828351	0.80[EUR][1000 genomes]
rs10828363	0.95[EUR][1000 genomes]
rs7903292	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9787658	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23140400-23144400	Enhancers	HSMM	muscle
2	chr10:23141200-23144400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:23142000-23144400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:23143000-23144400	Enhancers	NH-A	brain
5	chr10:23143000-23144400	Enhancers	Osteobl	bone
6	chr10:23143600-23144400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:23143600-23144400	Enhancers	Fetal Heart	heart
8	chr10:23143800-23144400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:23144000-23144400	Flanking Active TSS	K562	blood
10	chr10:23144200-23144400	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:23144200-23144400	Enhancers	Right Atrium	heart
12	chr10:23144200-23144400	Enhancers	Right Ventricle	heart
13	chr10:23144200-23144600	Enhancers	Placenta	Placenta
14	chr10:23144200-23144600	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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