Variant report

Variant	rs35687987
Chromosome Location	chr10:23126459-23126460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10734042	0.80[ASN][1000 genomes]
rs10741010	0.80[ASN][1000 genomes]
rs10764346	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10828345	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828346	0.82[ASN][1000 genomes]
rs10828348	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11814688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67531879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7084892	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7475039	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7899129	0.80[ASN][1000 genomes]
rs7903292	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23121800-23128600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:23122600-23131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23124200-23126600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:23126000-23126600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:23126000-23127000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:23126200-23126800	Enhancers	HUVEC	blood vessel
9	chr10:23126400-23126600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
10	chr10:23126400-23126600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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