Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23121025..23123725-chr10:23125978..23128015,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10828336	0.80[ASN][1000 genomes]
rs10828342	0.86[EUR][1000 genomes]
rs10828343	0.87[EUR][1000 genomes]
rs10828345	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11013140	0.80[ASN][1000 genomes]
rs11013146	0.84[EUR][1000 genomes]
rs11492538	0.85[EUR][1000 genomes]
rs11814688	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2222871	0.80[ASN][1000 genomes]
rs35687987	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4534468	0.84[ASN][1000 genomes]
rs4747447	0.87[EUR][1000 genomes]
rs4748823	0.83[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs6482239	0.81[ASN][1000 genomes]
rs6482240	0.81[ASN][1000 genomes]
rs67531879	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7080378	0.80[ASN][1000 genomes]
rs7085974	0.82[ASN][1000 genomes]
rs7098985	0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7475039	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894952	0.81[ASN][1000 genomes]
rs875598	0.81[ASN][1000 genomes]
rs9732527	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7084892	MSRB2	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23120200-23124800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23120400-23123400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:23120600-23124000	Enhancers	Brain Angular Gyrus	brain
4	chr10:23120800-23122200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:23121000-23124400	Enhancers	Brain Substantia Nigra	brain
6	chr10:23121200-23122400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:23121200-23124000	Enhancers	Fetal Intestine Small	intestine
8	chr10:23121400-23122200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:23121400-23122400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:23121600-23122000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:23121600-23124400	Enhancers	Brain Hippocampus Middle	brain
12	chr10:23121800-23122400	Weak transcription	Fetal Intestine Large	intestine
13	chr10:23121800-23122600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:23121800-23122600	Weak transcription	Stomach Mucosa	stomach
15	chr10:23121800-23128600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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