Variant report

Variant	rs10828362
Chromosome Location	chr10:23173258-23173259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10734042	0.85[EUR][1000 genomes]
rs10741009	0.81[EUR][1000 genomes]
rs10741010	0.84[EUR][1000 genomes]
rs10741012	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10764347	0.98[EUR][1000 genomes]
rs10764351	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764353	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764354	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764355	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10764356	0.96[ASN][1000 genomes]
rs10764357	0.97[ASN][1000 genomes]
rs10764358	0.95[ASN][1000 genomes]
rs10764361	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10764362	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828350	0.88[EUR][1000 genomes]
rs10828359	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828363	0.98[ASN][1000 genomes]
rs10828364	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828367	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10828368	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11013151	0.82[EUR][1000 genomes]
rs11013168	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12241713	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12262044	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12355848	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1578343	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2105270	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2886153	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4748829	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7899129	0.85[EUR][1000 genomes]
rs7899968	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9988672	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23170000-23174600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:23170000-23174600	Weak transcription	Pancreas	Pancrea
3	chr10:23170200-23174600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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