Variant report

Variant	rs708005
Chromosome Location	chr6:36933269-36933270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36933241..36935002-chr6:36938613..36940205,2	MCF-7	breast:
3	chr6:36856253..36859191-chr6:36932885..36935045,2	K562	blood:
4	chr6:36921333..36923898-chr6:36932868..36934927,2	K562	blood:
5	chr6:36929829..36933522-chr6:36953197..36956380,5	MCF-7	breast:
6	chr6:36928176..36930778-chr6:36931482..36933887,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17624006	0.93[EUR][1000 genomes]
rs41272194	0.87[EUR][1000 genomes]
rs41272198	0.94[EUR][1000 genomes]
rs58012316	0.95[EUR][1000 genomes]
rs62406491	0.88[EUR][1000 genomes]
rs62406492	0.88[EUR][1000 genomes]
rs62406493	0.88[EUR][1000 genomes]
rs62406498	0.89[EUR][1000 genomes]
rs62406499	0.90[EUR][1000 genomes]
rs62406522	0.90[EUR][1000 genomes]
rs708006	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72846863	0.86[EUR][1000 genomes]
rs72846873	0.88[EUR][1000 genomes]
rs72848004	0.89[EUR][1000 genomes]
rs9470445	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36927200-36933400	Enhancers	Stomach Mucosa	stomach
2	chr6:36928000-36933600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:36928200-36935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:36928600-36935000	Weak transcription	HSMMtube	muscle
5	chr6:36928600-36935400	Weak transcription	Small Intestine	intestine
6	chr6:36928800-36934000	Weak transcription	HSMM	muscle
7	chr6:36928800-36935000	Weak transcription	HUVEC	blood vessel
8	chr6:36929000-36934200	Weak transcription	Osteobl	bone
9	chr6:36929000-36934400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:36929000-36934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:36929000-36935200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:36929000-36935400	Weak transcription	Ovary	ovary
13	chr6:36929000-36935400	Weak transcription	A549	lung
14	chr6:36929200-36934600	Weak transcription	NH-A	brain
15	chr6:36929400-36934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:36929400-36935200	Weak transcription	K562	blood
17	chr6:36929600-36936800	Weak transcription	Hela-S3	cervix
18	chr6:36931400-36935000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:36931400-36935000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:36931400-36935000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:36931400-36935600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:36931600-36934800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:36931600-36935000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:36931600-36935200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:36931600-36935200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:36931600-36935200	Weak transcription	HMEC	breast
27	chr6:36931600-36935400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:36931600-36935400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:36931600-36936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:36931600-36938600	Weak transcription	Fetal Brain Male	brain
31	chr6:36931800-36934200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:36931800-36934400	Weak transcription	Colonic Mucosa	Colon
33	chr6:36931800-36934400	Weak transcription	Fetal Intestine Large	intestine
34	chr6:36931800-36934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:36931800-36934800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:36931800-36935000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:36931800-36935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:36931800-36948600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:36932000-36933800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:36932000-36934000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:36932000-36934200	Weak transcription	NHDF-Ad	bronchial
42	chr6:36932000-36934400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:36932000-36934400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:36932000-36934600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:36932000-36935000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:36932000-36935200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:36932200-36934000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:36932200-36934000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:36932200-36934200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:36932200-36934200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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