Variant report

Variant	rs7080192
Chromosome Location	chr10:97422803-97422804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97415761..97418551-chr10:97421893..97424781,3	K562	blood:
2	chr10:97420551..97423519-chr10:97425006..97428987,4	MCF-7	breast:
3	chr10:97415703..97418525-chr10:97420454..97423040,3	MCF-7	breast:
4	chr10:97417025..97421162-chr10:97421538..97425770,6	K562	blood:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11188418	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188428	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188433	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12784530	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2282305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35722210	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7073937	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97423000	Weak transcription	Lung	lung
3	chr10:97416800-97423000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
6	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97417000-97423000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:97417000-97423000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:97417000-97423000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:97417000-97423000	Weak transcription	Pancreas	Pancrea
11	chr10:97417000-97423200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:97417000-97423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:97417000-97423200	Weak transcription	Left Ventricle	heart
14	chr10:97417000-97423400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:97417000-97423400	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:97417000-97423800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:97417000-97424000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:97417000-97428600	Weak transcription	Fetal Kidney	kidney
19	chr10:97417000-97434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:97417000-97434800	Weak transcription	Ovary	ovary
21	chr10:97417000-97434800	Weak transcription	HUVEC	blood vessel
22	chr10:97417000-97436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:97417000-97436400	Weak transcription	HMEC	breast
24	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
28	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
29	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
30	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
32	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:97417000-97445800	Weak transcription	NHLF	lung
34	chr10:97417200-97423000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:97417200-97423000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:97417200-97423000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:97417200-97423000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:97417200-97423000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:97417200-97423000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:97417200-97423000	Weak transcription	Primary B cells from cord blood	blood
41	chr10:97417200-97423000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:97417200-97423000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:97417200-97423000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:97417200-97423000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:97417200-97423000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97417200-97423000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:97417200-97423000	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97417200-97423000	Weak transcription	Brain Germinal Matrix	brain
49	chr10:97417200-97423000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:97417200-97423000	Weak transcription	Fetal Intestine Large	intestine

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