Variant report

Variant	rs7080796
Chromosome Location	chr10:28414791-28414792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10826404	0.83[ASN][1000 genomes]
rs10826406	0.89[CEU][hapmap]
rs11006889	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs11006890	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs11006892	0.81[EUR][1000 genomes]
rs2997200	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs3902060	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894989	chr10:28384098-28449974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv949151	chr10:28386125-28455221	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1845096	chr10:28405411-28423204	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28364800-28416600	Weak transcription	Pancreas	Pancrea
2	chr10:28367800-28420200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:28376600-28416600	Weak transcription	Fetal Intestine Large	intestine
5	chr10:28378000-28418400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:28378600-28425600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:28379200-28416600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:28389600-28416400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:28392200-28417000	Weak transcription	Esophagus	oesophagus
10	chr10:28392400-28416800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:28396400-28422400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:28396800-28416600	Weak transcription	Aorta	Aorta
13	chr10:28398000-28417200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:28401800-28414800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:28403400-28414800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:28403600-28443200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:28404800-28416800	Weak transcription	Fetal Stomach	stomach
18	chr10:28406600-28421600	Weak transcription	Primary B cells from cord blood	blood
19	chr10:28407600-28418800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:28408200-28415000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:28409200-28416600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:28409400-28418800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:28409600-28427800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:28410000-28414800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:28410200-28419200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:28410400-28420600	Weak transcription	HepG2	liver
27	chr10:28411000-28415600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:28411000-28421000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:28411400-28415000	Enhancers	Hela-S3	cervix
30	chr10:28412600-28414800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:28412600-28415200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:28412600-28415200	Enhancers	NH-A	brain
33	chr10:28412600-28415200	Enhancers	Osteobl	bone
34	chr10:28412800-28415000	Enhancers	HSMM	muscle
35	chr10:28412800-28415200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:28413000-28424200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:28413200-28416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:28413200-28418200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:28413200-28419200	Weak transcription	HMEC	breast
40	chr10:28413200-28426200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:28413200-28440600	Weak transcription	Left Ventricle	heart
42	chr10:28413400-28416400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:28413400-28419000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:28413400-28419400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:28413800-28414800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:28413800-28425400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:28414000-28419200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:28414200-28414800	Weak transcription	Fetal Lung	lung
49	chr10:28414200-28416200	Weak transcription	Primary T cells from cord blood	blood
50	chr10:28414200-28418600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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