Variant report

Variant	rs11006890
Chromosome Location	chr10:28420181-28420182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28415197..28416716-chr10:28418291..28420406,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10763651	1.00[CEU][hapmap]
rs10826397	0.83[JPT][hapmap]
rs10826398	0.83[JPT][hapmap]
rs10826404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826405	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10826410	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[EUR][1000 genomes]
rs10826412	0.89[EUR][1000 genomes]
rs10826413	0.89[EUR][1000 genomes]
rs11006818	0.84[JPT][hapmap]
rs11006825	0.83[JPT][hapmap]
rs11006832	0.83[JPT][hapmap]
rs11006833	0.84[JPT][hapmap]
rs11006834	0.84[JPT][hapmap]
rs11006836	0.87[JPT][hapmap]
rs11006839	0.84[JPT][hapmap]
rs11006840	0.84[JPT][hapmap]
rs11006869	0.83[JPT][hapmap]
rs11006877	0.83[JPT][hapmap]
rs11006889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006893	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11006894	0.80[CHB][hapmap]
rs11006895	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11006906	0.89[EUR][1000 genomes]
rs11006907	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs11006910	0.91[CHB][hapmap];0.89[EUR][1000 genomes]
rs11006913	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs11527607	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs11817203	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12219860	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1317790	0.83[JPT][hapmap]
rs17757844	0.83[JPT][hapmap]
rs2997200	0.82[ASN][1000 genomes]
rs3802521	0.83[JPT][hapmap]
rs3885635	0.83[JPT][hapmap]
rs4279924	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4317882	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4506531	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4622158	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7071369	0.86[JPT][hapmap]
rs7080796	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs7100675	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[EUR][1000 genomes]
rs73608049	0.89[EUR][1000 genomes]
rs73608052	0.87[EUR][1000 genomes]
rs927676	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894989	chr10:28384098-28449974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv949151	chr10:28386125-28455221	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1845096	chr10:28405411-28423204	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
11	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv520842	chr10:28419760-28422708	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv947794	chr10:28420102-28426424	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28367800-28420200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28378600-28425600	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:28396400-28422400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:28403600-28443200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:28406600-28421600	Weak transcription	Primary B cells from cord blood	blood
7	chr10:28409600-28427800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:28410400-28420600	Weak transcription	HepG2	liver
9	chr10:28411000-28421000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:28413000-28424200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:28413200-28426200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:28413200-28440600	Weak transcription	Left Ventricle	heart
13	chr10:28413800-28425400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:28414200-28420800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:28416000-28422000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:28416200-28420600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:28416200-28425200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:28416800-28423800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:28417000-28421000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:28417000-28449200	Weak transcription	Pancreas	Pancrea
21	chr10:28417200-28421200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:28417200-28421600	Weak transcription	Lung	lung
23	chr10:28417200-28422000	Weak transcription	Fetal Intestine Small	intestine
24	chr10:28417200-28422600	Weak transcription	Fetal Stomach	stomach
25	chr10:28417600-28458000	Weak transcription	Aorta	Aorta
26	chr10:28418000-28425600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:28418600-28421000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:28418800-28420400	Enhancers	Hela-S3	cervix
29	chr10:28418800-28420600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:28419000-28420200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:28419400-28420600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:28419400-28422000	Weak transcription	Primary T cells from cord blood	blood
33	chr10:28419600-28420200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr10:28419600-28421800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:28419600-28422200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:28419600-28422200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr10:28419600-28422400	Weak transcription	Fetal Intestine Large	intestine
38	chr10:28419600-28424000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:28419600-28425800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:28419800-28420600	Enhancers	HUVEC	blood vessel
41	chr10:28419800-28426200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:28419800-28426600	Weak transcription	HSMMtube	muscle

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