Variant report

Variant	rs11006913
Chromosome Location	chr10:28470732-28470733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10763651	1.00[CEU][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10826405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs10826406	0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap]
rs10826410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10826412	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10826413	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10826420	0.82[JPT][hapmap]
rs11006833	1.00[YRI][hapmap]
rs11006889	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap]
rs11006890	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs11006893	0.87[AMR][1000 genomes]
rs11006894	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs11006895	0.87[AMR][1000 genomes]
rs11006906	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11006907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11006910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006928	0.84[CHD][hapmap];0.84[MEX][hapmap]
rs11006958	1.00[ASW][hapmap];0.84[MEX][hapmap];1.00[YRI][hapmap]
rs11006992	0.84[MEX][hapmap]
rs11006995	0.84[MEX][hapmap]
rs11007003	0.84[MEX][hapmap]
rs11527607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11817203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs1824171	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4279924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs4317882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs4506531	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs4622158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs7068246	0.83[JPT][hapmap]
rs7100675	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73608049	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73608052	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs927676	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:28467600-28472600	Weak transcription	Fetal Stomach	stomach
3	chr10:28467600-28485400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:28467600-28491800	Weak transcription	Psoas Muscle	Psoas
5	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
6	chr10:28467800-28471000	Enhancers	Hela-S3	cervix
7	chr10:28467800-28495200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:28468200-28471400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:28468200-28484600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:28469000-28471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:28469400-28471200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:28469600-28471000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:28469600-28471000	Enhancers	HSMMtube	muscle
14	chr10:28469600-28471400	Enhancers	HSMM	muscle
15	chr10:28469800-28491000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:28470000-28485600	Weak transcription	Primary T cells from cord blood	blood
17	chr10:28470200-28470800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:28470200-28471600	Enhancers	Fetal Heart	heart
19	chr10:28470400-28471000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:28470400-28471000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:28470400-28471200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:28470400-28471600	Enhancers	Colon Smooth Muscle	Colon
23	chr10:28470600-28470800	Active TSS	Stomach Smooth Muscle	stomach
24	chr10:28470600-28471000	Enhancers	Osteobl	bone
25	chr10:28470600-28471400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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