Variant report

Variant	rs7068246
Chromosome Location	chr10:28464753-28464754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10508736	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10740785	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10763645	0.91[ASN][1000 genomes]
rs10763646	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10763647	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10763648	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10763649	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10763650	0.85[CHB][hapmap]
rs10826410	0.83[JPT][hapmap]
rs10826420	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10826421	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10826423	0.91[ASN][1000 genomes]
rs10826424	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11006907	0.87[JPT][hapmap]
rs11006910	0.86[JPT][hapmap]
rs11006913	0.83[JPT][hapmap]
rs11006914	0.84[EUR][1000 genomes]
rs11006915	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11006917	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11527607	0.82[JPT][hapmap]
rs12049636	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12248472	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12251587	0.93[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12255686	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1937807	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1937808	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1937809	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2477344	0.97[ASN][1000 genomes]
rs2607539	0.82[JPT][hapmap]
rs2801835	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2801838	0.91[ASN][1000 genomes]
rs2985513	0.93[ASN][1000 genomes]
rs2985535	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2997205	0.95[ASN][1000 genomes]
rs2997210	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs35494924	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847382	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3901407	0.93[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3905706	0.93[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4568902	0.93[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7068687	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7088552	0.93[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7096944	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7100675	0.82[JPT][hapmap]
rs7893311	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7920803	0.83[CEU][hapmap]
rs7922685	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
10	nsv521787	chr10:28458902-28464753	Weak transcription Flanking Active TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28439000-28466600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr10:28439000-28467000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:28439200-28466600	Weak transcription	Primary T cells from cord blood	blood
4	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:28452200-28467000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:28458800-28466400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:28460800-28467200	Weak transcription	Ovary	ovary
8	chr10:28461000-28467000	Weak transcription	Aorta	Aorta
9	chr10:28461200-28466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:28461200-28467000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:28461200-28467200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:28461200-28467200	Weak transcription	Fetal Lung	lung
13	chr10:28461400-28466800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:28461400-28467000	Weak transcription	Psoas Muscle	Psoas
15	chr10:28461400-28469600	Weak transcription	Fetal Heart	heart
16	chr10:28461600-28466800	Weak transcription	Liver	Liver
17	chr10:28461600-28467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:28463000-28466600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:28464600-28464800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:28464600-28466800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links