Variant report

Variant	rs35494924
Chromosome Location	chr10:28466881-28466882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10763645	0.89[ASN][1000 genomes]
rs10826420	0.89[ASN][1000 genomes]
rs10826421	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826423	0.89[ASN][1000 genomes]
rs11006914	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11006915	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12248472	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12251587	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12255686	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2477344	0.94[ASN][1000 genomes]
rs2801838	0.89[ASN][1000 genomes]
rs2985513	0.91[ASN][1000 genomes]
rs2997205	0.92[ASN][1000 genomes]
rs3847382	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3901407	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3905706	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4568902	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7068246	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068687	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7088552	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7922685	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28439000-28467000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:28452200-28467000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:28460800-28467200	Weak transcription	Ovary	ovary
5	chr10:28461000-28467000	Weak transcription	Aorta	Aorta
6	chr10:28461200-28467000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:28461200-28467200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:28461200-28467200	Weak transcription	Fetal Lung	lung
9	chr10:28461400-28467000	Weak transcription	Psoas Muscle	Psoas
10	chr10:28461400-28469600	Weak transcription	Fetal Heart	heart
11	chr10:28461600-28467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:28465800-28467000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:28466600-28467000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:28466600-28467000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:28466600-28467000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:28466600-28467000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:28466600-28467000	Enhancers	Hela-S3	cervix
18	chr10:28466600-28467200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:28466600-28468000	Active TSS	Stomach Smooth Muscle	stomach
20	chr10:28466800-28467000	Enhancers	Primary hematopoietic stem cells	blood
21	chr10:28466800-28467000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:28466800-28467000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:28466800-28467000	Enhancers	Liver	Liver
24	chr10:28466800-28467000	Enhancers	Colon Smooth Muscle	Colon
25	chr10:28466800-28467000	Enhancers	Duodenum Mucosa	Duodenum
26	chr10:28466800-28467000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr10:28466800-28467000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:28466800-28467000	Enhancers	HMEC	breast
29	chr10:28466800-28467000	Enhancers	HUVEC	blood vessel
30	chr10:28466800-28467200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr10:28466800-28467200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
32	chr10:28466800-28467200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr10:28466800-28467200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr10:28466800-28467200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:28466800-28467200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:28466800-28467200	Enhancers	Brain Angular Gyrus	brain
37	chr10:28466800-28467200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:28466800-28467200	Enhancers	Dnd41	blood
39	chr10:28466800-28467200	Enhancers	HSMMtube	muscle
40	chr10:28466800-28467400	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr10:28466800-28467400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:28466800-28467400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:28466800-28467600	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr10:28466800-28467600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr10:28466800-28467800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:28466800-28468200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr10:28466800-28468400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr10:28466800-28468400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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