Variant report

Variant	rs7085247
Chromosome Location	chr10:55359472-55359473
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1489829	0.83[AMR][1000 genomes]
rs1489830	0.83[AMR][1000 genomes]
rs1565344	0.83[AMR][1000 genomes]
rs1602161	0.83[AMR][1000 genomes]
rs1906927	0.83[AMR][1000 genomes]
rs58768217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59159561	1.00[AMR][1000 genomes]
rs61010340	1.00[AMR][1000 genomes]
rs7068897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069666	0.83[AMR][1000 genomes]
rs7071020	0.83[AMR][1000 genomes]
rs7084570	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv8665	chr10:55341562-55361281	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757386	chr10:55357136-55531037	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55354000-55359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:55355400-55359600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:55355800-55359800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:55355800-55360000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:55356200-55359800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:55356400-55359600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:55357000-55359600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:55357400-55359600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:55357600-55359600	Enhancers	HMEC	breast
10	chr10:55357600-55359800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:55357600-55361000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:55357800-55359600	Enhancers	NHEK	skin
13	chr10:55357800-55359800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:55358000-55359800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:55358600-55359800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:55359000-55359800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr10:55359200-55359600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:55359200-55359800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:55359200-55361200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:55359400-55359600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:55359400-55359800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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