Variant report

Variant	rs7085587
Chromosome Location	chr10:18792089-18792090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18792074..18794567-chr10:18795840..18797601,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10741099	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10741100	0.84[EUR][1000 genomes]
rs10764542	0.86[CEU][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10764566	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764584	0.90[ASN][1000 genomes]
rs10828835	0.90[ASN][1000 genomes]
rs10828859	0.90[ASN][1000 genomes]
rs10828879	0.90[ASN][1000 genomes]
rs10828901	0.90[ASN][1000 genomes]
rs10828906	0.90[ASN][1000 genomes]
rs10829038	0.90[ASN][1000 genomes]
rs10829133	0.90[ASN][1000 genomes]
rs10829139	0.90[ASN][1000 genomes]
rs10829140	0.90[ASN][1000 genomes]
rs11014830	0.90[ASN][1000 genomes]
rs11014852	0.90[ASN][1000 genomes]
rs11015263	0.90[ASN][1000 genomes]
rs11015411	0.90[ASN][1000 genomes]
rs12257556	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12359508	0.90[ASN][1000 genomes]
rs12570585	0.85[ASN][1000 genomes]
rs12765362	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12771084	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772534	0.90[ASN][1000 genomes]
rs12776325	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12781038	0.90[ASN][1000 genomes]
rs1352655	0.90[ASN][1000 genomes]
rs2691159	0.90[ASN][1000 genomes]
rs4328135	0.81[ASN][1000 genomes]
rs4578284	0.90[ASN][1000 genomes]
rs4747353	0.90[ASN][1000 genomes]
rs4748474	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748475	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748480	0.85[ASN][1000 genomes]
rs4748489	0.90[ASN][1000 genomes]
rs4748495	0.90[ASN][1000 genomes]
rs4748508	0.90[ASN][1000 genomes]
rs6482516	0.90[ASN][1000 genomes]
rs6482529	0.90[ASN][1000 genomes]
rs7068575	0.85[ASN][1000 genomes]
rs7070695	0.90[ASN][1000 genomes]
rs7071192	0.90[ASN][1000 genomes]
rs7073651	0.85[ASN][1000 genomes]
rs7077692	0.81[ASN][1000 genomes]
rs7078884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080903	0.90[ASN][1000 genomes]
rs7081811	0.90[ASN][1000 genomes]
rs7082094	0.90[ASN][1000 genomes]
rs7084525	0.90[ASN][1000 genomes]
rs7085332	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086911	0.81[ASN][1000 genomes]
rs7088214	0.85[ASN][1000 genomes]
rs7090293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091578	0.90[ASN][1000 genomes]
rs7095070	0.90[ASN][1000 genomes]
rs7098313	0.90[ASN][1000 genomes]
rs7099975	0.90[ASN][1000 genomes]
rs7895235	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907153	1.00[JPT][hapmap]
rs7920997	0.90[ASN][1000 genomes]
rs7921366	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7085587	NSUN6	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18775600-18800600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
4	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
5	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:18779600-18803200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18781000-18803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18786000-18794600	Weak transcription	Aorta	Aorta
10	chr10:18786800-18802000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:18787400-18807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:18787400-18808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:18787400-18810200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:18787600-18794600	Weak transcription	Ovary	ovary
15	chr10:18787600-18803200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:18788000-18801800	Weak transcription	Fetal Stomach	stomach
17	chr10:18788200-18794600	Weak transcription	Fetal Lung	lung
18	chr10:18788200-18808400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:18788200-18809600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:18789800-18807800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:18790000-18793400	Weak transcription	Fetal Heart	heart
22	chr10:18790400-18796000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:18790600-18793800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:18790600-18794200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:18790600-18794600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:18790600-18802000	Weak transcription	Left Ventricle	heart
27	chr10:18790800-18794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:18790800-18800600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:18790800-18801600	Weak transcription	Liver	Liver
30	chr10:18791000-18807200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links