Variant report

Variant	rs7073651
Chromosome Location	chr10:18801761-18801762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10741099	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10764542	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs10764566	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10764584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10828835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828859	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10828901	0.95[ASN][1000 genomes]
rs10828906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10828970	0.82[EUR][1000 genomes]
rs10829038	0.95[ASN][1000 genomes]
rs10829133	0.95[ASN][1000 genomes]
rs10829139	0.95[ASN][1000 genomes]
rs10829140	0.95[ASN][1000 genomes]
rs11014830	0.95[ASN][1000 genomes]
rs11014852	0.95[ASN][1000 genomes]
rs11015263	0.95[ASN][1000 genomes]
rs11015411	0.95[ASN][1000 genomes]
rs11015416	1.00[JPT][hapmap]
rs12359508	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12570585	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12765362	0.95[ASN][1000 genomes]
rs12771084	0.85[ASN][1000 genomes]
rs12772534	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12776325	0.81[ASN][1000 genomes]
rs12781038	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1352655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1971272	1.00[JPT][hapmap]
rs2691159	0.95[ASN][1000 genomes]
rs4328135	0.86[ASN][1000 genomes]
rs4456162	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4475829	0.87[EUR][1000 genomes]
rs4475830	0.87[EUR][1000 genomes]
rs4484992	0.86[EUR][1000 genomes]
rs4578284	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4634984	0.85[EUR][1000 genomes]
rs4636555	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs4747353	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs4748474	0.85[ASN][1000 genomes]
rs4748475	0.81[ASN][1000 genomes]
rs4748480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748489	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748491	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748495	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs4748508	0.95[ASN][1000 genomes]
rs6482516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6482529	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482534	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6482545	0.86[EUR][1000 genomes]
rs7068575	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7070695	0.95[ASN][1000 genomes]
rs7071192	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7075304	0.82[EUR][1000 genomes]
rs7077692	0.86[ASN][1000 genomes]
rs7078884	0.85[ASN][1000 genomes]
rs7080903	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7081811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7082094	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7084525	0.95[ASN][1000 genomes]
rs7085332	0.85[ASN][1000 genomes]
rs7085587	0.85[ASN][1000 genomes]
rs7086034	0.85[ASN][1000 genomes]
rs7086911	0.86[ASN][1000 genomes]
rs7088214	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090293	0.85[ASN][1000 genomes]
rs7091578	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7092437	0.92[CEU][hapmap]
rs7095070	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs7098313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7098721	0.82[EUR][1000 genomes]
rs7099975	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7101269	0.82[EUR][1000 genomes]
rs7101352	0.81[ASN][1000 genomes]
rs7895235	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7895709	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7895775	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7920997	0.95[ASN][1000 genomes]
rs7921366	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7073651	RP11-499P20.2	cis	lung	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
2	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
3	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18779600-18803200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18781000-18803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:18786800-18802000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:18787400-18807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18787400-18808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:18787400-18810200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:18787600-18803200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:18788000-18801800	Weak transcription	Fetal Stomach	stomach
13	chr10:18788200-18808400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:18788200-18809600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:18789800-18807800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:18790600-18802000	Weak transcription	Left Ventricle	heart
17	chr10:18791000-18807200	Weak transcription	Brain Anterior Caudate	brain
18	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:18794000-18818400	Weak transcription	Fetal Brain Male	brain
20	chr10:18795000-18803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:18795000-18807200	Weak transcription	Aorta	Aorta
22	chr10:18799800-18803400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon
24	chr10:18800200-18826800	Weak transcription	Brain Substantia Nigra	brain
25	chr10:18800400-18827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:18800600-18802200	Strong transcription	Fetal Intestine Large	intestine
27	chr10:18800600-18803600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:18800800-18804000	Weak transcription	Ovary	ovary
29	chr10:18800800-18818800	Weak transcription	Brain Germinal Matrix	brain
30	chr10:18800800-18819400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:18801000-18818800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:18801200-18802400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:18801200-18802800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:18801200-18809800	Weak transcription	Brain Angular Gyrus	brain
35	chr10:18801400-18802200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:18801400-18804800	Strong transcription	Fetal Lung	lung
37	chr10:18801600-18801800	Weak transcription	Fetal Heart	heart
38	chr10:18801600-18802400	Strong transcription	Liver	Liver
39	chr10:18801600-18802600	Strong transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:18801600-18802600	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:18801600-18802800	Strong transcription	Pancreas	Pancrea
42	chr10:18801600-18803000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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