Variant report

Variant	rs7101352
Chromosome Location	chr10:18927937-18927938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18927647..18933802-chr10:18937639..18941916,7	K562	blood:
2	chr10:18921869..18924781-chr10:18927596..18930415,2	K562	blood:

Variant related genes	Relation type
ENSG00000241058	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10741099	0.84[EUR][1000 genomes]
rs10741100	0.82[EUR][1000 genomes]
rs10764566	0.83[EUR][1000 genomes]
rs10829038	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10829041	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10829042	0.81[EUR][1000 genomes]
rs10829133	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10829139	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10829140	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015243	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11015263	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11015306	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11015307	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11015411	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12412484	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12569760	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12765362	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12781038	0.81[AFR][1000 genomes]
rs1352655	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1880682	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1968961	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2691159	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4456162	0.81[AMR][1000 genomes]
rs4578284	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4748480	0.81[ASN][1000 genomes]
rs4748495	0.82[AFR][1000 genomes]
rs4748503	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4748508	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7070695	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7071897	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7073651	0.81[ASN][1000 genomes]
rs7077692	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7084525	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7086911	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7088214	0.84[AFR][1000 genomes]
rs7095070	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7098313	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7895235	0.84[EUR][1000 genomes]
rs7907153	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7921366	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv982911	chr10:18911989-18931479	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3406489	chr10:18926180-18928752	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7101352	NSUN6	cis	Adipose Subcutaneous	GTEx
rs7101352	NSUN6	cis	Nerve Tibial	GTEx
rs7101352	RP11-499P20.2	cis	lung	GTEx
rs7101352	NSUN6	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18905000-18938200	Weak transcription	Hela-S3	cervix
2	chr10:18916800-18930400	Weak transcription	Dnd41	blood
3	chr10:18916800-18935200	Weak transcription	K562	blood
4	chr10:18916800-18936200	Weak transcription	A549	lung
5	chr10:18916800-18937000	Weak transcription	GM12878-XiMat	blood
6	chr10:18916800-18938400	Weak transcription	HSMMtube	muscle
7	chr10:18916800-18939800	Weak transcription	Aorta	Aorta
8	chr10:18916800-18940200	Weak transcription	Spleen	Spleen
9	chr10:18917000-18929000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:18917000-18929200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:18917000-18930200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:18917000-18930200	Weak transcription	Fetal Stomach	stomach
13	chr10:18917000-18930400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:18917000-18930400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:18917000-18930400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:18917000-18930400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:18917000-18930400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:18917000-18930400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:18917000-18930600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:18917000-18930600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:18917000-18930600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:18917000-18930600	Weak transcription	Left Ventricle	heart
23	chr10:18917000-18930800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:18917000-18932400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:18917000-18932600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:18917000-18934200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:18917000-18934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:18917000-18934400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:18917000-18934600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:18917000-18934600	Weak transcription	Fetal Brain Female	brain
31	chr10:18917000-18934800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:18917000-18934800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:18917000-18935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:18917000-18935000	Weak transcription	Primary T cells from cord blood	blood
35	chr10:18917000-18936800	Weak transcription	Brain Germinal Matrix	brain
36	chr10:18917000-18937200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:18917000-18937400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:18917000-18938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:18917000-18938200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:18917000-18938200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:18917000-18938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:18917000-18938200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:18917000-18938200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:18917000-18938200	Weak transcription	Brain Angular Gyrus	brain
45	chr10:18917000-18938400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:18917000-18938400	Weak transcription	Ovary	ovary
47	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:18917000-18938400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:18917000-18938800	Weak transcription	HSMM	muscle
50	chr10:18917000-18939600	Weak transcription	Placenta	Placenta

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