Variant report

Variant	rs7086081
Chromosome Location	chr10:96031610-96031611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2274222	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41291134	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56131311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413348	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57612487	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61044747	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730809	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
3	chr10:95994600-96045400	Weak transcription	Lung	lung
4	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
5	chr10:96004400-96034000	Weak transcription	Fetal Brain Male	brain
6	chr10:96006600-96033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:96013200-96034000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:96013600-96034000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:96014000-96034000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:96015000-96070200	Weak transcription	Fetal Brain Female	brain
11	chr10:96016800-96032600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:96017000-96033600	Weak transcription	HSMMtube	muscle
13	chr10:96020800-96039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:96023600-96038400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr10:96024000-96033800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr10:96024200-96033600	Weak transcription	Fetal Heart	heart
17	chr10:96025600-96035000	Strong transcription	Fetal Intestine Large	intestine
18	chr10:96026000-96034800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:96026600-96033800	Weak transcription	Right Ventricle	heart
20	chr10:96027400-96033800	Strong transcription	Fetal Stomach	stomach
21	chr10:96028000-96034800	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:96028400-96033800	Weak transcription	A549	lung
23	chr10:96028800-96033200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:96028800-96041200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:96029200-96034000	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:96030200-96031800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr10:96030200-96031800	Strong transcription	Fetal Lung	lung
28	chr10:96030200-96032600	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr10:96030400-96037000	Weak transcription	Gastric	stomach
30	chr10:96030600-96031800	Strong transcription	Stomach Mucosa	stomach
31	chr10:96030600-96032000	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr10:96030600-96032600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:96030600-96033400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:96030600-96033800	Weak transcription	Pancreas	Pancrea
35	chr10:96030800-96031800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
36	chr10:96030800-96032000	ZNF genes & repeats	Placenta	Placenta
37	chr10:96031000-96033600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:96031000-96033800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:96031000-96033800	Weak transcription	Ovary	ovary
40	chr10:96031000-96034200	Weak transcription	Osteobl	bone
41	chr10:96031000-96037000	Weak transcription	Colonic Mucosa	Colon
42	chr10:96031200-96031800	ZNF genes & repeats	Brain Germinal Matrix	brain
43	chr10:96031200-96034200	Weak transcription	Aorta	Aorta
44	chr10:96031600-96039200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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