Variant report

Variant	rs730809
Chromosome Location	chr10:95998836-95998837
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12766693	1.00[JPT][hapmap]
rs2274222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28478908	0.93[EUR][1000 genomes]
rs3758524	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs3758528	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs41291134	0.93[ASN][1000 genomes]
rs55635140	0.85[EUR][1000 genomes]
rs55666785	0.87[EUR][1000 genomes]
rs56041302	0.93[EUR][1000 genomes]
rs56041757	0.93[EUR][1000 genomes]
rs56131311	0.84[ASN][1000 genomes]
rs56141979	0.93[EUR][1000 genomes]
rs56240705	0.93[EUR][1000 genomes]
rs56376834	1.00[EUR][1000 genomes]
rs56400969	0.93[EUR][1000 genomes]
rs56413348	0.84[ASN][1000 genomes]
rs57612487	0.93[ASN][1000 genomes]
rs61044747	0.84[ASN][1000 genomes]
rs7086081	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:95984600-96000600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:95984800-96023800	Weak transcription	Pancreas	Pancrea
6	chr10:95985800-96005800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:95985800-96033800	Weak transcription	Left Ventricle	heart
8	chr10:95986000-96011400	Weak transcription	Stomach Mucosa	stomach
9	chr10:95988200-96005600	Weak transcription	Fetal Brain Female	brain
10	chr10:95989400-96005800	Weak transcription	Ovary	ovary
11	chr10:95989400-96005800	Weak transcription	Spleen	Spleen
12	chr10:95994600-96005800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:95994600-96045400	Weak transcription	Lung	lung
14	chr10:95994800-96005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:95995000-96005800	Weak transcription	Gastric	stomach
16	chr10:95995200-96005800	Weak transcription	HSMMtube	muscle
17	chr10:95995800-95999600	Weak transcription	Small Intestine	intestine
18	chr10:95995800-96005800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:95995800-96005800	Weak transcription	Adipose Nuclei	Adipose
20	chr10:95995800-96051800	Weak transcription	Fetal Kidney	kidney
21	chr10:95996000-96002000	Weak transcription	Fetal Intestine Small	intestine
22	chr10:95996000-96005600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:95997200-95999400	Strong transcription	A549	lung
24	chr10:95997200-96000000	Strong transcription	Duodenum Mucosa	Duodenum
25	chr10:95997200-96000000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr10:95997400-95999600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:95997400-95999800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:95997400-95999800	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr10:95997600-95999800	Strong transcription	Fetal Intestine Large	intestine
30	chr10:95997800-95999600	Weak transcription	Fetal Stomach	stomach
31	chr10:95997800-96000400	Weak transcription	Fetal Lung	lung
32	chr10:95997800-96005600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:95997800-96005600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:95998000-96005800	Weak transcription	Aorta	Aorta
35	chr10:95998200-96000200	Strong transcription	Fetal Muscle Leg	muscle
36	chr10:95998600-95999400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:95998600-96002800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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