Variant report

Variant	rs56400969
Chromosome Location	chr10:96120324-96120325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12766693	0.88[ASN][1000 genomes]
rs12781422	0.88[ASN][1000 genomes]
rs28478908	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35446195	0.96[ASN][1000 genomes]
rs3758524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3758528	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55666785	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55980465	0.81[ASN][1000 genomes]
rs56041302	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56041757	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56141979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56240705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56376834	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs730809	0.93[EUR][1000 genomes]
rs7914997	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
3	chr10:96078200-96121600	Weak transcription	Fetal Brain Male	brain
4	chr10:96080400-96121000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:96081600-96121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:96081600-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:96081800-96121000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:96081800-96121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:96082400-96121000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:96085000-96121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:96085000-96122200	Weak transcription	Gastric	stomach
12	chr10:96086200-96121200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:96087600-96121200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:96088200-96121800	Weak transcription	Aorta	Aorta
15	chr10:96089000-96120600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:96089600-96121000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:96090400-96121000	Weak transcription	Fetal Heart	heart
18	chr10:96096200-96121000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:96100000-96121800	Weak transcription	Colonic Mucosa	Colon
20	chr10:96102800-96121000	Weak transcription	Brain Angular Gyrus	brain
21	chr10:96104200-96121000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:96104600-96120600	Weak transcription	Small Intestine	intestine
23	chr10:96104600-96121000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:96105800-96121000	Strong transcription	Primary B cells from cord blood	blood
25	chr10:96108400-96120400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr10:96108400-96120600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:96108400-96121800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:96110400-96121800	Weak transcription	Spleen	Spleen
29	chr10:96110400-96122000	Weak transcription	Pancreas	Pancrea
30	chr10:96111600-96121200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:96111600-96121800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:96111600-96121800	Weak transcription	Lung	lung
33	chr10:96112600-96121000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:96112800-96121400	Weak transcription	Right Ventricle	heart
35	chr10:96113400-96121000	Weak transcription	Thymus	Thymus
36	chr10:96113400-96122000	Weak transcription	Esophagus	oesophagus
37	chr10:96114600-96121600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:96116200-96120400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr10:96116200-96121000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:96116400-96120400	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr10:96116400-96120600	Strong transcription	Fetal Muscle Leg	muscle
42	chr10:96117200-96121000	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:96117400-96121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr10:96117600-96120800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr10:96117600-96121000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:96117600-96121000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:96117600-96121000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:96117600-96121000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:96117600-96121400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:96117800-96121000	Weak transcription	Brain Substantia Nigra	brain

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