Variant report

Variant	rs56240705
Chromosome Location	chr10:96088526-96088527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96085018..96086998-chr10:96087280..96089590,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12766693	0.96[ASN][1000 genomes]
rs12781422	0.96[ASN][1000 genomes]
rs28478908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35446195	0.88[ASN][1000 genomes]
rs3758524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55666785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980465	0.88[ASN][1000 genomes]
rs56041302	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56041757	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56141979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376834	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56400969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs730809	0.93[EUR][1000 genomes]
rs7914997	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
3	chr10:96069200-96089800	Weak transcription	HUVEC	blood vessel
4	chr10:96072800-96093800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:96075200-96091000	Weak transcription	Right Ventricle	heart
6	chr10:96075200-96112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:96076000-96089000	Weak transcription	Fetal Heart	heart
8	chr10:96076000-96095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:96076400-96093600	Weak transcription	HepG2	liver
10	chr10:96076600-96090400	Weak transcription	NHDF-Ad	bronchial
11	chr10:96076600-96091000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:96076600-96097000	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:96077600-96100200	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr10:96078200-96121600	Weak transcription	Fetal Brain Male	brain
15	chr10:96079800-96090400	Weak transcription	Fetal Thymus	thymus
16	chr10:96080200-96090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:96080200-96092400	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:96080200-96095000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:96080200-96095800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:96080400-96089800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:96080400-96090800	Weak transcription	Dnd41	blood
22	chr10:96080400-96094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:96080400-96096000	Strong transcription	HMEC	breast
24	chr10:96080400-96100200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:96080400-96105200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:96080400-96121000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:96080600-96088800	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:96080600-96092400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:96080600-96101800	Weak transcription	Thymus	Thymus
30	chr10:96080800-96102600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr10:96081000-96105600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr10:96081000-96118200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:96081200-96118400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:96081400-96091800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:96081400-96091800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:96081600-96100400	Strong transcription	Fetal Intestine Large	intestine
37	chr10:96081600-96117400	Strong transcription	NH-A	brain
38	chr10:96081600-96121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:96081600-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:96081800-96100400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:96081800-96117400	Strong transcription	HSMM	muscle
42	chr10:96081800-96121000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:96081800-96121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:96082000-96118400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:96082200-96090400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:96082200-96095600	Weak transcription	Brain Substantia Nigra	brain
47	chr10:96082200-96113000	Weak transcription	Esophagus	oesophagus
48	chr10:96082400-96099400	Weak transcription	Brain Angular Gyrus	brain
49	chr10:96082400-96121000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:96082600-96091200	Weak transcription	Lung	lung

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