Variant report

Variant	rs7087084
Chromosome Location	chr10:973164-973165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:963442..966137-chr10:972073..974355,2	MCF-7	breast:
2	chr10:963108..967368-chr10:972053..975262,4	MCF-7	breast:
3	chr10:967396..974147-chr10:1032852..1035834,6	MCF-7	breast:
4	chr10:973015..975040-chr10:1093762..1096495,2	K562	blood:
5	chr10:972336..974147-chr10:1040690..1042738,2	K562	blood:

Variant related genes	Relation type
ENSG00000107937	Chromatin interaction
ENSG00000047056	Chromatin interaction
ENSG00000205740	Chromatin interaction
ENSG00000067064	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11253515	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584581	0.83[AMR][1000 genomes]
rs73584591	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
10	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
16	nsv825207	chr10:957020-1005451	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	nsv825208	chr10:965883-1004836	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:929400-975800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:929400-976400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:947800-975400	Weak transcription	Fetal Brain Male	brain
4	chr10:949600-974600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:951000-975400	Weak transcription	Fetal Kidney	kidney
6	chr10:952600-975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:953000-974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:954600-975000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:954800-973600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:955000-974600	Weak transcription	Colonic Mucosa	Colon
11	chr10:956800-975400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:956800-975600	Weak transcription	Fetal Brain Female	brain
13	chr10:956800-976400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:957600-975200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:958000-975600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:958200-974000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:958200-974200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:959400-973200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:965800-976200	Weak transcription	Aorta	Aorta
20	chr10:966200-975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:966800-974400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:967400-973200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:968000-973600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:968000-974400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:968000-975800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:968200-974200	Weak transcription	Colon Smooth Muscle	Colon
27	chr10:968400-974400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:968400-975000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:968400-975200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:968400-975800	Weak transcription	NH-A	brain
31	chr10:969000-973200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:969000-974400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:969000-975200	Weak transcription	Thymus	Thymus
34	chr10:969000-975800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:969200-976000	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr10:970000-973200	Enhancers	Left Ventricle	heart
37	chr10:970200-973200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:970400-973200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:970400-975000	Strong transcription	NHEK	skin
40	chr10:970600-973800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr10:971000-973200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:971200-974400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:971200-974800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:971200-975800	Weak transcription	Brain Germinal Matrix	brain
45	chr10:971400-974400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:971400-974400	Weak transcription	Brain Angular Gyrus	brain
47	chr10:971400-974400	Weak transcription	Brain Anterior Caudate	brain
48	chr10:971400-974600	Weak transcription	Primary T cells from cord blood	blood
49	chr10:971400-975800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:971600-973400	Enhancers	Rectal Mucosa Donor 31	rectum

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