Variant report

Variant	rs7087139
Chromosome Location	chr10:91275513-91275514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs303193	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs303194	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs304469	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933507	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903979	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7924208	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91264800-91277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91274400-91276800	Weak transcription	Left Ventricle	heart
3	chr10:91274800-91275600	Flanking Active TSS	HSMM	muscle
4	chr10:91274800-91276000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:91274800-91276000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr10:91274800-91276000	Weak transcription	Pancreas	Pancrea
7	chr10:91274800-91276000	Active TSS	Right Ventricle	heart
8	chr10:91274800-91276400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:91274800-91276400	Flanking Active TSS	HSMMtube	muscle
10	chr10:91274800-91276600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91274800-91276600	Enhancers	Fetal Stomach	stomach
12	chr10:91274800-91276600	Enhancers	HMEC	breast
13	chr10:91275000-91275600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:91275000-91275600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:91275000-91275800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:91275000-91276000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:91275000-91276200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:91275000-91276200	Active TSS	Right Atrium	heart
19	chr10:91275000-91276400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:91275000-91276400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:91275000-91276400	Enhancers	Fetal Muscle Leg	muscle
22	chr10:91275000-91276600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:91275000-91276600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:91275000-91276800	Enhancers	Colon Smooth Muscle	Colon
25	chr10:91275200-91275600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:91275200-91275600	Enhancers	Brain Substantia Nigra	brain
27	chr10:91275200-91275800	Flanking Active TSS	Fetal Heart	heart
28	chr10:91275200-91276000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:91275200-91276000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:91275200-91276200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr10:91275200-91276400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:91275200-91276400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr10:91275200-91276400	Enhancers	Fetal Intestine Small	intestine
34	chr10:91275200-91276600	Enhancers	Rectal Smooth Muscle	rectum
35	chr10:91275200-91276600	Enhancers	Hela-S3	cervix
36	chr10:91275200-91277800	Weak transcription	Aorta	Aorta
37	chr10:91275400-91275600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:91275400-91275600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:91275400-91275600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:91275400-91275600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr10:91275400-91275600	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr10:91275400-91275600	Enhancers	NHDF-Ad	bronchial
43	chr10:91275400-91275600	Enhancers	NHLF	lung
44	chr10:91275400-91275600	Enhancers	Osteobl	bone
45	chr10:91275400-91275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:91275400-91275800	Active TSS	NH-A	brain
47	chr10:91275400-91276000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:91275400-91276000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:91275400-91276000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:91275400-91276000	Flanking Active TSS	NHEK	skin

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