Variant report

Variant	rs4933507
Chromosome Location	chr10:91275757-91275758
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs160054	0.82[CEU][hapmap]
rs303188	0.82[CEU][hapmap]
rs303192	0.82[CEU][hapmap]
rs303193	0.88[ASN][1000 genomes]
rs303194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs304469	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7087139	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903979	0.86[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7924208	0.86[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91264800-91277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91274400-91276800	Weak transcription	Left Ventricle	heart
3	chr10:91274800-91276000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:91274800-91276000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr10:91274800-91276000	Weak transcription	Pancreas	Pancrea
6	chr10:91274800-91276000	Active TSS	Right Ventricle	heart
7	chr10:91274800-91276400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:91274800-91276400	Flanking Active TSS	HSMMtube	muscle
9	chr10:91274800-91276600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:91274800-91276600	Enhancers	Fetal Stomach	stomach
11	chr10:91274800-91276600	Enhancers	HMEC	breast
12	chr10:91275000-91275800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:91275000-91276000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:91275000-91276200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:91275000-91276200	Active TSS	Right Atrium	heart
16	chr10:91275000-91276400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:91275000-91276400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:91275000-91276400	Enhancers	Fetal Muscle Leg	muscle
19	chr10:91275000-91276600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:91275000-91276600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:91275000-91276800	Enhancers	Colon Smooth Muscle	Colon
22	chr10:91275200-91275800	Flanking Active TSS	Fetal Heart	heart
23	chr10:91275200-91276000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:91275200-91276000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:91275200-91276200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:91275200-91276400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr10:91275200-91276400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:91275200-91276400	Enhancers	Fetal Intestine Small	intestine
29	chr10:91275200-91276600	Enhancers	Rectal Smooth Muscle	rectum
30	chr10:91275200-91276600	Enhancers	Hela-S3	cervix
31	chr10:91275200-91277800	Weak transcription	Aorta	Aorta
32	chr10:91275400-91275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:91275400-91275800	Active TSS	NH-A	brain
34	chr10:91275400-91276000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:91275400-91276000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:91275400-91276000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:91275400-91276000	Flanking Active TSS	NHEK	skin
38	chr10:91275400-91276200	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr10:91275400-91276200	Enhancers	Fetal Lung	lung
40	chr10:91275400-91276200	Enhancers	Fetal Muscle Trunk	muscle
41	chr10:91275400-91276200	Enhancers	Psoas Muscle	Psoas
42	chr10:91275400-91276200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr10:91275400-91276600	Enhancers	Liver	Liver
44	chr10:91275400-91276600	Enhancers	Placenta Amnion	Placenta Amnion
45	chr10:91275600-91275800	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr10:91275600-91275800	Flanking Active TSS	NHDF-Ad	bronchial
47	chr10:91275600-91275800	Flanking Active TSS	NHLF	lung
48	chr10:91275600-91276000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:91275600-91276000	Enhancers	Stomach Smooth Muscle	stomach
50	chr10:91275600-91276000	Flanking Active TSS	Osteobl	bone

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