Variant report

Variant	rs303192
Chromosome Location	chr10:91262959-91262960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509574	0.83[YRI][hapmap]
rs160054	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303175	0.92[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs303176	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs303177	0.95[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs303178	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs303179	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303181	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs303183	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs303184	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs303188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303189	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303190	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303191	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303195	0.92[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs303196	0.92[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs303197	0.92[CEU][hapmap]
rs303199	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs303202	0.92[CEU][hapmap]
rs303204	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs304416	0.91[CEU][hapmap]
rs304429	0.92[CEU][hapmap]
rs304430	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs4933507	0.82[CEU][hapmap]
rs73373256	0.82[AFR][1000 genomes]
rs7903979	0.96[CEU][hapmap]
rs7924208	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91251200-91274000	Weak transcription	Left Ventricle	heart
2	chr10:91259200-91263200	Weak transcription	Fetal Thymus	thymus
3	chr10:91259200-91268600	Weak transcription	Gastric	stomach
4	chr10:91261600-91263000	Enhancers	Fetal Stomach	stomach
5	chr10:91261600-91264200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:91262000-91263000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:91262000-91263600	Enhancers	NHDF-Ad	bronchial
8	chr10:91262000-91263800	Enhancers	HSMM	muscle
9	chr10:91262000-91264000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:91262200-91263000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91262200-91263000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:91262200-91263800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:91262200-91263800	Enhancers	NH-A	brain
14	chr10:91262200-91263800	Enhancers	NHEK	skin
15	chr10:91262200-91263800	Enhancers	NHLF	lung
16	chr10:91262200-91264200	Enhancers	Osteobl	bone
17	chr10:91262200-91265600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:91262400-91263600	Enhancers	Right Atrium	heart
19	chr10:91262600-91263400	Weak transcription	Esophagus	oesophagus
20	chr10:91262600-91273800	Weak transcription	Pancreas	Pancrea
21	chr10:91262800-91263800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:91262800-91264800	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links