Variant report

Variant	rs303176
Chromosome Location	chr10:91253940-91253941
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs160054	0.86[AMR][1000 genomes]
rs303175	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs303177	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs303178	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs303179	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs303181	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs303183	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs303184	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs303188	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs303189	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs303190	0.83[AMR][1000 genomes]
rs303191	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs303192	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs303195	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs303196	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs303197	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs497191	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
2	chr10:91243800-91254000	Weak transcription	Right Atrium	heart
3	chr10:91250400-91254000	Enhancers	Fetal Heart	heart
4	chr10:91250600-91254200	Weak transcription	HSMM	muscle
5	chr10:91251200-91274000	Weak transcription	Left Ventricle	heart
6	chr10:91253800-91254400	Enhancers	HSMMtube	muscle
7	chr10:91253800-91254600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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