Variant report

Variant	rs497191
Chromosome Location	chr10:91249153-91249154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs160054	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs303175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs303176	0.86[AMR][1000 genomes]
rs303177	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs303178	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs303179	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs303181	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs303183	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs303184	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs303190	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs303195	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs303196	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs303197	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs303199	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs303202	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs303204	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs304416	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs304429	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs304430	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91238800-91250000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:91239000-91252600	Weak transcription	Right Ventricle	heart
3	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
4	chr10:91242000-91253800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:91243200-91249200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:91243400-91250400	Weak transcription	HSMM	muscle
7	chr10:91243800-91254000	Weak transcription	Right Atrium	heart
8	chr10:91247000-91250200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:91247000-91250400	Weak transcription	Fetal Heart	heart
10	chr10:91248400-91250200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links