Variant report

Variant	rs304416
Chromosome Location	chr10:91232692-91232693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs160053	0.89[ASN][1000 genomes]
rs160054	0.91[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs303162	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs303175	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303177	0.95[CEU][hapmap];0.87[YRI][hapmap]
rs303178	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap]
rs303181	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs303183	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303184	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs303188	0.92[CEU][hapmap]
rs303190	0.84[EUR][1000 genomes]
rs303192	0.91[CEU][hapmap]
rs303195	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303196	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303197	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs303199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs304429	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs304430	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs497191	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7903979	0.84[CEU][hapmap]
rs7924208	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91224000-91234600	Weak transcription	Right Ventricle	heart
2	chr10:91224200-91236000	Weak transcription	Lung	lung
3	chr10:91226800-91237800	Weak transcription	Stomach Mucosa	stomach
4	chr10:91227000-91234600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:91227000-91235200	Weak transcription	NH-A	brain
6	chr10:91227000-91237800	Weak transcription	Osteobl	bone
7	chr10:91228400-91235600	Enhancers	Liver	Liver
8	chr10:91229400-91236400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:91230600-91235000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:91230600-91236200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:91230800-91234000	Weak transcription	Left Ventricle	heart
12	chr10:91230800-91234600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:91230800-91234600	Weak transcription	Pancreas	Pancrea
14	chr10:91230800-91234600	Weak transcription	Right Atrium	heart
15	chr10:91230800-91236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:91230800-91237800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:91231200-91233000	Weak transcription	Fetal Heart	heart
18	chr10:91231200-91234800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:91231400-91235000	Weak transcription	NHLF	lung
20	chr10:91231400-91236000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:91231600-91233400	Weak transcription	HepG2	liver
22	chr10:91231600-91234000	Weak transcription	Fetal Lung	lung
23	chr10:91231600-91234600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:91231600-91234800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:91231600-91235600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:91231600-91235600	Weak transcription	HMEC	breast
27	chr10:91231600-91235600	Weak transcription	HSMM	muscle
28	chr10:91231800-91233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:91231800-91234600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:91231800-91234600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:91231800-91235200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:91231800-91235400	Weak transcription	NHDF-Ad	bronchial

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