Variant report

Variant	rs10509574
Chromosome Location	chr10:91264289-91264290
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12262765	0.89[ASN][1000 genomes]
rs303192	0.83[YRI][hapmap]
rs55801659	0.89[ASN][1000 genomes]
rs7082073	1.00[JPT][hapmap]
rs7086611	0.89[ASN][1000 genomes]
rs7094200	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73373256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373266	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7907127	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7907662	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7921314	1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91251200-91274000	Weak transcription	Left Ventricle	heart
2	chr10:91259200-91268600	Weak transcription	Gastric	stomach
3	chr10:91262200-91265600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:91262600-91273800	Weak transcription	Pancreas	Pancrea
5	chr10:91262800-91264800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr10:91263600-91265400	Weak transcription	Right Atrium	heart
7	chr10:91263600-91274800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:91263800-91265400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:91264000-91264400	Weak transcription	Fetal Thymus	thymus
10	chr10:91264000-91264600	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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