Variant report

Variant	rs7086611
Chromosome Location	chr10:91247477-91247478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10509574	0.89[ASN][1000 genomes]
rs12262765	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801659	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57142004	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082073	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094200	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373256	0.89[ASN][1000 genomes]
rs7907127	0.95[EUR][1000 genomes]
rs7907662	0.95[EUR][1000 genomes]
rs7921314	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91238800-91250000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:91239000-91252600	Weak transcription	Right Ventricle	heart
3	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
4	chr10:91242000-91253800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:91243200-91249200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:91243400-91250400	Weak transcription	HSMM	muscle
7	chr10:91243800-91254000	Weak transcription	Right Atrium	heart
8	chr10:91247000-91250200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:91247000-91250400	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links