Variant report

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10509574	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262765	0.89[ASN][1000 genomes]
rs303192	0.82[AFR][1000 genomes]
rs55801659	0.89[ASN][1000 genomes]
rs7086611	0.89[ASN][1000 genomes]
rs7094200	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73373266	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7907127	0.81[EUR][1000 genomes]
rs7907662	0.81[EUR][1000 genomes]
rs7921314	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91251200-91274000	Weak transcription	Left Ventricle	heart
2	chr10:91259200-91268600	Weak transcription	Gastric	stomach
3	chr10:91261600-91264200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:91262000-91263800	Enhancers	HSMM	muscle
5	chr10:91262000-91264000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:91262200-91263800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:91262200-91263800	Enhancers	NH-A	brain
8	chr10:91262200-91263800	Enhancers	NHEK	skin
9	chr10:91262200-91263800	Enhancers	NHLF	lung
10	chr10:91262200-91264200	Enhancers	Osteobl	bone
11	chr10:91262200-91265600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:91262600-91273800	Weak transcription	Pancreas	Pancrea
13	chr10:91262800-91263800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:91262800-91264800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:91263200-91264000	Enhancers	Fetal Thymus	thymus
16	chr10:91263400-91264200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:91263400-91264200	Enhancers	Fetal Stomach	stomach
18	chr10:91263600-91263800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:91263600-91265400	Weak transcription	Right Atrium	heart
20	chr10:91263600-91274800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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