Variant report

Variant	rs7082073
Chromosome Location	chr10:91240464-91240465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509574	1.00[JPT][hapmap]
rs11185734	1.00[CEU][hapmap]
rs11185736	1.00[CEU][hapmap]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12257062	1.00[CEU][hapmap]
rs12262765	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1332334	1.00[CEU][hapmap]
rs1332338	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap]
rs55801659	0.90[EUR][1000 genomes]
rs57142004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7086611	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093054	1.00[CEU][hapmap]
rs7094200	1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs7101353	1.00[CEU][hapmap]
rs72816711	1.00[ASN][1000 genomes]
rs7898580	1.00[CEU][hapmap]
rs7907127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907230	1.00[CEU][hapmap]
rs7907662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921314	1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923948	1.00[CEU][hapmap]
rs9663530	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91234600-91242400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:91234600-91242600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr10:91235600-91243400	Enhancers	HSMM	muscle
4	chr10:91237000-91240800	Weak transcription	A549	lung
5	chr10:91237600-91241000	Enhancers	Fetal Lung	lung
6	chr10:91237800-91241000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr10:91237800-91241400	Enhancers	HSMMtube	muscle
8	chr10:91237800-91242000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr10:91237800-91242200	Enhancers	Adipose Nuclei	Adipose
10	chr10:91237800-91242200	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:91237800-91242400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:91237800-91242400	Enhancers	NHDF-Ad	bronchial
13	chr10:91237800-91242400	Enhancers	Osteobl	bone
14	chr10:91238000-91242400	Enhancers	NHLF	lung
15	chr10:91238200-91240800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:91238200-91240800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:91238400-91242800	Weak transcription	Lung	lung
18	chr10:91238800-91241000	Weak transcription	Hela-S3	cervix
19	chr10:91238800-91242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:91238800-91242400	Enhancers	Liver	Liver
21	chr10:91238800-91250000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:91239000-91240800	Weak transcription	NHEK	skin
23	chr10:91239000-91241000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:91239000-91242200	Weak transcription	Left Ventricle	heart
25	chr10:91239000-91252600	Weak transcription	Right Ventricle	heart
26	chr10:91239000-91261800	Weak transcription	Pancreas	Pancrea
27	chr10:91239200-91241000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:91239200-91243000	Weak transcription	Right Atrium	heart
29	chr10:91239400-91240600	Enhancers	Fetal Heart	heart
30	chr10:91239600-91242200	Enhancers	HMEC	breast
31	chr10:91239800-91242200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:91240000-91242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:91240000-91242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:91240000-91242400	Weak transcription	Fetal Intestine Large	intestine
35	chr10:91240000-91242400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:91240200-91240600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:91240200-91241000	Enhancers	Stomach Smooth Muscle	stomach
38	chr10:91240200-91242800	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:91240400-91240600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:91240400-91240800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:91240400-91240800	Weak transcription	NH-A	brain

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