Variant report

Variant	rs7923948
Chromosome Location	chr10:91065005-91065006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91064364..91065915-chr10:91069467..91071005,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11185734	1.00[CEU][hapmap]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12257062	1.00[CEU][hapmap]
rs1332334	1.00[CEU][hapmap]
rs1332338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17118228	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17121282	1.00[EUR][1000 genomes]
rs17121936	1.00[CEU][hapmap]
rs17122436	1.00[EUR][1000 genomes]
rs17387764	1.00[MEX][hapmap]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7082073	1.00[CEU][hapmap]
rs7093054	1.00[CEU][hapmap]
rs7101353	1.00[CEU][hapmap]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7898580	1.00[CEU][hapmap]
rs7907230	1.00[CEU][hapmap]
rs7920187	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91055800-91070000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:91056200-91065800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:91062200-91065600	Weak transcription	Fetal Brain Male	brain
4	chr10:91062200-91065800	Weak transcription	Gastric	stomach
5	chr10:91062800-91065600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:91062800-91065800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:91062800-91065800	Weak transcription	Fetal Stomach	stomach
8	chr10:91063200-91065200	Weak transcription	HSMM	muscle
9	chr10:91063200-91065800	Weak transcription	Aorta	Aorta
10	chr10:91063200-91065800	Weak transcription	Fetal Intestine Large	intestine
11	chr10:91063200-91066400	Weak transcription	Fetal Heart	heart
12	chr10:91063200-91066600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:91063200-91066800	Weak transcription	Osteobl	bone
14	chr10:91063200-91067000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:91063200-91074600	Weak transcription	Fetal Intestine Small	intestine
16	chr10:91063200-91076000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:91063400-91065800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:91063400-91068600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:91063400-91069800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:91063400-91072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:91063600-91065800	Weak transcription	NHDF-Ad	bronchial
22	chr10:91063800-91065600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:91063800-91065600	Weak transcription	Fetal Thymus	thymus
24	chr10:91063800-91065800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:91063800-91065800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:91063800-91065800	Weak transcription	Thymus	Thymus
27	chr10:91063800-91066000	Weak transcription	NHLF	lung
28	chr10:91063800-91066800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:91063800-91067800	Weak transcription	Stomach Mucosa	stomach
30	chr10:91063800-91068200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:91063800-91069200	Weak transcription	Esophagus	oesophagus
32	chr10:91063800-91069200	Weak transcription	Pancreas	Pancrea
33	chr10:91063800-91069200	Weak transcription	Right Atrium	heart
34	chr10:91063800-91070400	Weak transcription	Fetal Kidney	kidney
35	chr10:91063800-91074200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:91064000-91065400	Weak transcription	Primary B cells from cord blood	blood
37	chr10:91064000-91065400	Weak transcription	HSMMtube	muscle
38	chr10:91064000-91065600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:91064000-91065600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr10:91064000-91065600	Enhancers	Brain Substantia Nigra	brain
41	chr10:91064000-91065800	Weak transcription	Ovary	ovary
42	chr10:91064000-91065800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:91064000-91065800	Weak transcription	Spleen	Spleen
44	chr10:91064000-91066000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:91064000-91072800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:91064200-91065400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:91064200-91065600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr10:91064200-91065600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:91064200-91065600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:91064200-91065600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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