Variant report

Variant	rs9943338
Chromosome Location	chr10:91060563-91060564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17121282	1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91045600-91060800	Weak transcription	HSMM	muscle
2	chr10:91052800-91061000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:91055800-91060800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:91055800-91061000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:91055800-91070000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:91056000-91060600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:91056000-91060800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:91056000-91060800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:91056000-91061000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:91056200-91060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91056200-91060800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:91056200-91061000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:91056200-91061600	Weak transcription	Small Intestine	intestine
14	chr10:91056200-91065800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:91056400-91061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:91056400-91061000	Weak transcription	HSMMtube	muscle
17	chr10:91056400-91061000	Weak transcription	NHEK	skin
18	chr10:91056600-91060600	Weak transcription	Liver	Liver
19	chr10:91056600-91060800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:91056600-91060800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:91056800-91060600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:91056800-91060600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:91056800-91060800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:91056800-91060800	Weak transcription	NHLF	lung
25	chr10:91057000-91060600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:91057000-91060800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:91057000-91060800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:91057000-91060800	Weak transcription	Brain Substantia Nigra	brain
29	chr10:91057000-91060800	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:91057000-91060800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:91057000-91061000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:91057000-91061000	Weak transcription	Right Atrium	heart
33	chr10:91057200-91060600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:91057200-91060600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:91057400-91060800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:91057400-91060800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:91057600-91060800	Weak transcription	Primary B cells from cord blood	blood
38	chr10:91057600-91060800	Weak transcription	Adipose Nuclei	Adipose
39	chr10:91057600-91060800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:91057600-91061000	Weak transcription	Pancreas	Pancrea
41	chr10:91057600-91061800	Weak transcription	Spleen	Spleen
42	chr10:91057800-91060800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:91057800-91061000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:91057800-91061000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:91057800-91061800	Weak transcription	Lung	lung
46	chr10:91058000-91060800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:91058000-91061200	Weak transcription	Esophagus	oesophagus
48	chr10:91058000-91061800	Weak transcription	Gastric	stomach
49	chr10:91058400-91060800	Weak transcription	Hela-S3	cervix
50	chr10:91060200-91060600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links