Variant report

Variant	rs60411920
Chromosome Location	chr10:91176615-91176616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91009631..91012227-chr10:91174311..91176643,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107798	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17121282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58761256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91174600-91177000	Weak transcription	K562	blood
2	chr10:91175400-91176800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr10:91175400-91177800	Enhancers	Pancreas	Pancrea
4	chr10:91175400-91178800	Weak transcription	Gastric	stomach
5	chr10:91175400-91180200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91175400-91187600	Weak transcription	HUVEC	blood vessel
7	chr10:91175600-91176800	Enhancers	Primary T cells from cord blood	blood
8	chr10:91175600-91176800	Enhancers	Left Ventricle	heart
9	chr10:91175600-91176800	Enhancers	Spleen	Spleen
10	chr10:91175600-91177000	Weak transcription	NH-A	brain
11	chr10:91175600-91177200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:91175600-91177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:91175600-91177200	Weak transcription	Aorta	Aorta
14	chr10:91175600-91177200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:91175600-91177200	Weak transcription	Fetal Kidney	kidney
16	chr10:91175600-91177200	Weak transcription	HMEC	breast
17	chr10:91175600-91177400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:91175600-91177400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:91175600-91177600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:91175600-91178000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:91175600-91179600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:91175600-91181200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr10:91175600-91181200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:91175600-91183800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:91175600-91188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
27	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
28	chr10:91175800-91176800	Enhancers	Primary T cells fromperipheralblood	blood
29	chr10:91175800-91177000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:91175800-91177000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:91175800-91177000	Weak transcription	Osteobl	bone
32	chr10:91175800-91177400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:91175800-91177400	Weak transcription	A549	lung
34	chr10:91175800-91177400	Weak transcription	HSMMtube	muscle
35	chr10:91175800-91177400	Enhancers	NHDF-Ad	bronchial
36	chr10:91175800-91177800	Enhancers	Brain Substantia Nigra	brain
37	chr10:91175800-91178000	Weak transcription	Stomach Mucosa	stomach
38	chr10:91175800-91179600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:91175800-91182600	Weak transcription	Thymus	Thymus
40	chr10:91176000-91177000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:91176000-91177000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:91176000-91177200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:91176000-91177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:91176000-91177200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr10:91176000-91177200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr10:91176000-91177200	Weak transcription	Right Ventricle	heart
47	chr10:91176000-91177400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:91176000-91177400	Enhancers	Small Intestine	intestine
49	chr10:91176000-91177600	Enhancers	Brain Angular Gyrus	brain
50	chr10:91176000-91177600	Enhancers	Colon Smooth Muscle	Colon

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