Variant report

Variant	rs73369777
Chromosome Location	chr10:91154266-91154267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17121282	1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369762	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91151800-91154600	Active TSS	Fetal Muscle Leg	muscle
2	chr10:91151800-91154800	Active TSS	Brain Angular Gyrus	brain
3	chr10:91151800-91154800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr10:91151800-91154800	Active TSS	Ovary	ovary
5	chr10:91152000-91154600	Active TSS	GM12878-XiMat	blood
6	chr10:91152800-91173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:91152800-91174000	Weak transcription	Gastric	stomach
8	chr10:91153000-91164200	Weak transcription	Esophagus	oesophagus
9	chr10:91153200-91154400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:91153200-91154600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:91153200-91154600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr10:91153200-91154600	Weak transcription	Small Intestine	intestine
13	chr10:91153200-91155200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:91153200-91155400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:91153200-91155600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:91153200-91156200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:91153200-91157400	Weak transcription	A549	lung
18	chr10:91153200-91157600	Weak transcription	HepG2	liver
19	chr10:91153200-91157800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:91153200-91162000	Weak transcription	HSMM	muscle
21	chr10:91153200-91163800	Weak transcription	Spleen	Spleen
22	chr10:91153200-91173600	Weak transcription	Brain Germinal Matrix	brain
23	chr10:91153400-91155000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:91153400-91155000	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr10:91153400-91155200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:91153400-91155800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:91153400-91157400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:91153400-91158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:91153400-91162200	Weak transcription	Placenta	Placenta
30	chr10:91153400-91162200	Weak transcription	Lung	lung
31	chr10:91153400-91163400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:91153400-91164000	Weak transcription	Pancreas	Pancrea
33	chr10:91153400-91172400	Weak transcription	Thymus	Thymus
34	chr10:91153600-91154600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr10:91153600-91154600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:91153600-91154600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:91153600-91155000	Weak transcription	Aorta	Aorta
38	chr10:91153600-91155400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr10:91153600-91155400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr10:91153600-91157600	Weak transcription	HSMMtube	muscle
41	chr10:91153600-91157800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:91153600-91162200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr10:91153600-91162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:91153600-91165400	Weak transcription	Fetal Thymus	thymus
45	chr10:91153600-91173600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:91154000-91154800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:91154000-91154800	Weak transcription	Left Ventricle	heart
48	chr10:91154000-91154800	Weak transcription	Psoas Muscle	Psoas
49	chr10:91154000-91155000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:91154000-91155200	Weak transcription	Fetal Muscle Trunk	muscle

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