Variant report

Variant	rs60918860
Chromosome Location	chr10:91041781-91041782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr10:91041641-91041915	Hela-S3	cervix:	n/a	n/a
2	GATA3	chr10:91041544-91042162	SK-N-SH	brain:	n/a	n/a
3	NFIC	chr10:91041182-91042161	SK-N-SH	brain:	n/a	chr10:91041551-91041568 chr10:91041551-91041567
4	STAT3	chr10:91041713-91041927	MCF10A-Er-Src	breast:	n/a	chr10:91041852-91041863
5	FOS	chr10:91041780-91042018	MCF10A-Er-Src	breast:	n/a	n/a
6	TCF12	chr10:91041613-91042219	SK-N-SH	brain:	n/a	n/a
7	EP300	chr10:91041628-91042174	SK-N-SH_RA	brain:	n/a	chr10:91041694-91041704
8	STAT3	chr10:91041718-91042065	MCF10A-Er-Src	breast:	n/a	chr10:91041852-91041863
9	EP300	chr10:91041154-91041916	ECC-1	luminal epithelium:	n/a	chr10:91041694-91041704
10	STAT3	chr10:91041763-91042002	MCF10A-Er-Src	breast:	n/a	chr10:91041852-91041863
11	NFIC	chr10:91041015-91042096	ECC-1	luminal epithelium:	n/a	chr10:91041551-91041568 chr10:91041551-91041567
12	EP300	chr10:91041643-91042168	SK-N-SH_RA	brain:	n/a	chr10:91041694-91041704
13	POLR2A	chr10:91041761-91042144	SK-N-SH	brain:	n/a	n/a
14	FOS	chr10:91041718-91041939	MCF10A-Er-Src	breast:	n/a	n/a
15	PBX3	chr10:91041688-91042202	SK-N-SH	brain:	n/a	n/a
16	TCF12	chr10:91041266-91042227	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000232110	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17121282	1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91034400-91043400	Enhancers	NHDF-Ad	bronchial
2	chr10:91036800-91043200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:91036800-91043200	Enhancers	NHLF	lung
4	chr10:91038000-91043000	Enhancers	Hela-S3	cervix
5	chr10:91038200-91042800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:91038200-91043200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:91038200-91043400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:91038400-91042800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:91038400-91042800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:91038400-91043000	Weak transcription	Ovary	ovary
11	chr10:91038400-91043200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:91038400-91043400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:91038400-91043400	Weak transcription	Aorta	Aorta
14	chr10:91038600-91042600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:91038800-91043400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:91039000-91042800	Weak transcription	Colonic Mucosa	Colon
17	chr10:91039200-91042600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:91039200-91042800	Weak transcription	HepG2	liver
19	chr10:91039200-91043000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:91039200-91043000	Weak transcription	Right Ventricle	heart
21	chr10:91039200-91043000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:91039200-91043200	Weak transcription	Fetal Intestine Large	intestine
23	chr10:91039200-91043400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:91039200-91043400	Weak transcription	Fetal Intestine Small	intestine
25	chr10:91039400-91042800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:91039400-91042800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:91039400-91042800	Weak transcription	Fetal Lung	lung
28	chr10:91039400-91042800	Weak transcription	Fetal Stomach	stomach
29	chr10:91039400-91042800	Weak transcription	Psoas Muscle	Psoas
30	chr10:91039400-91043000	Weak transcription	Placenta	Placenta
31	chr10:91039400-91043400	Weak transcription	Stomach Mucosa	stomach
32	chr10:91039600-91042600	Weak transcription	Brain Anterior Caudate	brain
33	chr10:91039600-91042600	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:91039600-91042600	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:91039600-91042600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:91039600-91042800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:91039600-91042800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:91039600-91042800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:91039600-91043200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:91039600-91043400	Weak transcription	Liver	Liver
41	chr10:91039600-91043600	Weak transcription	Small Intestine	intestine
42	chr10:91039800-91042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:91039800-91042600	Weak transcription	Brain Angular Gyrus	brain
44	chr10:91039800-91042800	Weak transcription	Brain Substantia Nigra	brain
45	chr10:91039800-91043000	Weak transcription	Adipose Nuclei	Adipose
46	chr10:91040200-91042600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:91040200-91043400	Weak transcription	Left Ventricle	heart
48	chr10:91040400-91042800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:91040400-91042800	Weak transcription	Fetal Brain Male	brain
50	chr10:91040400-91042800	Weak transcription	Fetal Muscle Leg	muscle

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