Variant report

Variant	rs60065434
Chromosome Location	chr10:91082439-91082440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17121282	1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs59957944	0.87[AFR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91064200-91086600	Weak transcription	Hela-S3	cervix
2	chr10:91081800-91082600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:91082200-91085600	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:91082400-91082800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:91082400-91082800	Active TSS	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links