Variant report

Variant	rs17121282
Chromosome Location	chr10:91186310-91186311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91184701..91187287-chr10:91403234..91405861,2	MCF-7	breast:
2	chr10:91185712..91186672-chr10:91323338..91324059,3	K562	blood:
3	chr10:91185817..91186752-chr10:91323387..91324556,4	MCF-7	breast:
4	chr10:91009894..91012691-chr10:91185718..91187496,2	MCF-7	breast:
5	chr10:91186130..91186678-chr10:91323382..91324071,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000107798	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58761256	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175400-91187600	Weak transcription	HUVEC	blood vessel
2	chr10:91175600-91188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
4	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
5	chr10:91176200-91186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:91178000-91186400	Weak transcription	Fetal Stomach	stomach
7	chr10:91178000-91187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:91178200-91186400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:91178200-91191800	Weak transcription	Aorta	Aorta
10	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
11	chr10:91178400-91187200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:91178400-91188000	Weak transcription	Right Ventricle	heart
13	chr10:91178400-91191600	Weak transcription	A549	lung
14	chr10:91178800-91186400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:91179400-91186400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:91179400-91187600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:91179400-91187800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:91179400-91187800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:91179400-91187800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:91181200-91192800	Weak transcription	Left Ventricle	heart
22	chr10:91181800-91186400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91182000-91186400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:91182000-91186400	Weak transcription	Fetal Lung	lung
25	chr10:91182000-91187200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:91182200-91187400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:91182200-91191200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:91182200-91191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:91183800-91186400	Enhancers	HepG2	liver
30	chr10:91185600-91186400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:91186000-91186600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:91186000-91189000	Enhancers	HMEC	breast
33	chr10:91186000-91189600	Enhancers	Fetal Heart	heart
34	chr10:91186200-91186400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:91186200-91186400	Flanking Active TSS	Fetal Kidney	kidney
36	chr10:91186200-91187000	Enhancers	HSMMtube	muscle
37	chr10:91186200-91187200	Enhancers	NH-A	brain
38	chr10:91186200-91187800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:91186200-91188400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:91186200-91188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:91186200-91188400	Enhancers	NHLF	lung
42	chr10:91186200-91188400	Enhancers	Osteobl	bone
43	chr10:91186200-91188800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:91186200-91189000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:91186200-91189000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:91186200-91189000	Enhancers	NHEK	skin
47	chr10:91186200-91189400	Enhancers	HSMM	muscle
48	chr10:91186200-91189800	Enhancers	NHDF-Ad	bronchial

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